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Exosome-associated host–pathogen interaction: a potential effect of biofilm formation

Abstract

Exosomes being non-ionized micro-vesicles with a size range of 30–100 nm possess the ability to bring about intracellular communication and intercellular transport of various types of cellular components like miRNA, mRNA, DNA, and proteins. This is achieved through the targeted transmission of various inclusions to nearby or distant tissues. This is associated with the effective communication of information to bring about changes in physiological properties and functional attributes. The extracellular vesicles (EVs), produced by fungi, parasites, and bacteria, are responsible to bring about modulation/alteration of the immune responses exerted by the host body. The lipids, nucleic acids, proteins, and glycans of EVs derived from the pathogens act as the ligands of different families of pattern recognition receptors of the host body. The bacterial membrane vesicles (BMVs) are responsible for the transfer of small RNA species, along with other types of noncoding RNA thereby playing a key role in the regulation of the host immune system. Apart from immunomodulation, the BMVs are also responsible for bacterial colonization in the host tissue, biofilm formation, and survival therein showing antibiotic resistance, leading to pathogenesis and virulence. This mini-review would focus on the role of exosomes in the development of biofilm and consequent immunological responses within the host body along with an analysis of the mechanism associated with the development of resistance.

Introduction

Exosomes being a type of extracellular vesicles (EVs) are membrane-bound structures released mostly by prokaryotic and eukaryotic cells that help in secreting various types of biomolecules in a protected and concentrated manner. These are highly heterogeneous population and have distinct capacities to induce a multifaceted biological response. The array of exosomes may be abstracted on the basis of their size, content (cargo), effect on recipient cells, and origin (Kalluri and LeBleu 2020). EVs are the group of membrane-bound, nanosized vesicles that are being released by the cells and are responsible for the transportation of RNA, DNA, and proteins as molecules responsible for intercellular communication system (Zaborowski et al. 2015).

The diameter of the vesicles ranges from 10 to 300 nm and comprises of proteins, phospholipids, lipopolysaccharides, DNA, RNA, and lipids (Bonnington and Kuehn 2014). The size range of biofilm EVs suggests that they are actually exosomes (Abels and Breakefield 2016). The biological functionality and their ubiquitous prevalence in bacteria, dimorphic fungi, and eukaryotes have warranted an extensive study of these exosomes and their contribution toward infectivity.

It was found that in the pathogenic bacteria, the toxin delivery is accomplished by EVs that results in the damage of host cell. The secretion of the virulence factor by the Gram-negative bacteria that help them to combat host immunity is a complex phenomenon as it remains covered by lipid bilayer (Henderson et al. 2004). Mycobacterial extracellular vesicles (MEVs) are also studied for decades that remain embedded within the extracellular matrix of Mycobacterium ulcerans biofilms (Marsollier et al. 2007). Although the transport pattern of secretory vesicles differs from each other, the direct secretion of protein to extracellular milieu or to the nearby cells is the specific characteristic for the pathogenic bacterial cells.

The present mini review will focus on the contribution of biofilm exosomes in maintenance of cell-to-cell communication and acquisition of immune resistance for host–pathogen interactions.

Exosomes’ being a type of extracellular vesicles (EVs) are membrane-bound structures released mostly by prokaryotic and eukaryotic cells that help in secreting various types of biomolecules in a protected and concentrated manner. These are highly heterogeneous populations, comprised of proteins, phospholipids, lipopolysaccharides, DNA, RNA, and lipids (Bonnington and Kuehn 2014), thus distinct capacities to induce a multifaceted biological response. The arrays of exosomes are abstracted on the basis of their size, content (cargo), effect on recipient cells, and origin (Kalluri and LeBleu 2020).

The diameter of the vesicles ranges from 10 to 300 nm and density of 1.10–1.18 g/mL (Samanta et al. 2018). The biological functionality and their ubiquitous prevalence in bacteria, dimorphic fungi, and eukaryotes have warranted an extensive study of these exosomes and their contribution toward infectivity.

It was found that in the pathogenic bacteria, the toxin delivery is accomplished by EVs that results in the damage of the host cell. The secretion of the virulence factor by the Gram-negative bacteria that help them to combat host immunity is a complex phenomenon as it remains covered by a lipid bilayer (Henderson et al. 2004). Mycobacterial extracellular vesicles (MEVs) are also studied for decades that remain embedded within the extracellular matrix of Mycobacterium ulcerans biofilms (Marsollier et al. 2007). Exosomes (Outer Membrane Vesicles) play important roles in interspecies communication, the delivery of proteins, toxins, and DNA or RNA, it is thought that there is a direct correlation with biofilm, like contribution of outer membrane proteins to biofilm (Sieke et al. 2020), although the understanding is still in opaque (Wang et al. 2015). This is to add here that OMVs have almost exclusively been studied using planktonic cultures, little is known about their biogenesis and function in biofilms (Cooke et al. 2019) produced by pathogenic bacteria (Table 1).

Table 1 Role of exosomes in pathogenic infections

The present pursuit in mini review form will focus on the contribution of biofilm exosomes in the formation of biofilm, maintenance of cell-to-cell communication and acquisition of immune resistance for host–pathogen interactions.

Membrane vesicles (MV) and biofilm formation

By definition, exosomes of both Gram-positive and Gram-negative bacteria are called Membrane vesicles (MV), while the outer membrane vesicle, OMV (Cooke et al. 2019) is assigned to MV of Gram-negatives as it had borrowed the outer membrane (lipopolysaccharide [LPS], phospholipids, and integral membrane proteins) of Gram-negative bacteria (Caruana and Walper 2020).

OMVs that produced by the Gram-negative bacterial cells are spherical membrane-bound structure and endocytic in nature, synthesis of which is found to be necessary for the existence of the microbial consortia existing in the biofilm. Prior to resist the action of prescribed antibiotics, drug-resistant bacteria display OMVs, (The proteoliposomal nanoparticles). The exopolysachharides (EPS) is fundamental unit of biofilm, is released through the OMVs for biofilm organization. Further, it was observed that OMVs can give adhesive anchorage to growing biofilm inducing cell to cell contact (Jan et al. 2017), thus supporting action of adhesins. The high amounts of toxins, proteins, and virulence factors present in OMVs play a crucial role in the maintenance of communication, resource sharing between the bacterial cells and for host–pathogen interaction. Bacterial membrane vesicles are nanoparticles produced by both Gram-negative and Gram-positive bacteria. The adhesion in Gram-negative bacteria is accomplished by OMVs with the help of lipopolysaccharides (LPS).

The localization of chromosomal DNA in EVs from various Gram-negative pathogenic bacteria (Pseudomonas aeruginosa, Porphyromonas gingivalis, Salmonella Typhimurium) is mostly surface-associated (or extraluminal), which are involved in imparting virulence, stress response, antibiotic resistance, and metabolism (Chronopoulos and Kalluri 2020).

Bitto et al. (2017) had reported about source and putative function of impregnated DNA of OMVs of Pseudomonas aeruginosa, which is a notorious opportunistic Gram-negative multi-drug-resistant bacterium. It was described that the DNA present inside the OMVs are chromosomal in origin. The bacteria keep the extra amount of DNA in the cavity OMVs and extrude during log phase of its growth cycle (MacDonalda and Kuehn 2013). Further, it was reported that OMVs produced by Pseudomonas aeruginosa possess the ability to bring about transfer of DNA into the eukaryotic cells (Bitto et al. 2017). In addition, The DNA that is associated with the surface of the OMVs help in the development of biofilm and protection to the sessile microcolonies that are present within the biofilm (Figs. 1, 2). The OMVs from Ps. aeruginosa also possess greater amount of negatively charged B-bands, O-antigen heteropolymer (Rocchetta et al. 1999) of the LPS in comparison to neutral A-band (Kadurugamuwa and Beveridge 1995). The possible reason behind this phenomenon is to accommodate the heteropolymer, diverse serotype O-Antigen, as outer membrane components.

Fig. 1
figure 1

An artwork depicting the role of membrane vesicles (Orange spheres, indicated by arrows) interlinking the microcolonies of biofilm producing Gram-positive typical Staphylococci

Fig. 2
figure 2

Schematic representation of vesicles

Hence, it is inferred that DNA internal to OMVs may promote sharing of antibiotic resistance and virulence genes between bacteria through horizontal gene transfer, whereas DNA on the external surfaces of OMVs appears to be important for biofilm formation and protection of the biofilm (Liao et al. 2014).

It has been observed that the microvesicles (MVs) of Gram-positives play an important role in the maintenance of the intracellular matrix that is associated with the biofilm (Coelho and Casadevall 2019). The components that are associated with MVs help in bringing about the adhesive interactions taking place between the sessile microcolonies existing within the biofilm thereby maintaining its stability. It also helps in providing nutrient supply to the embedded cells within the matrix of biofilm and act as important factor in the development of antimicrobial resistance against various types of disinfectants (Toyofuku et al. 2012).

Host–pathogen interaction of exosomes

The bacteria deploy exosomes (Membrane vesicles) in response to immunological reactions, induced by the host immunological response. The MVs vary in accordance with their origin along with their function and composition. According to present understanding, the MVs have three primary functions, in the events of host–pathogen interaction. The functions are (a) The MVs act as mediators to transport the proteins, lipids, enzymes, drug-resistant genes, lytic enzymes, inducers for genes to carry out apoptic (programmed) cell death; (b) playing active role in ‘escape mechanism’ and (c) amplification of programmed cell death. Hence, the MVs are designated as ‘structural and functional bridges between the invading pathogen and host.

MVs that usually bulge out of the plasma membrane causing explosive lysis of the cell that result in the degradation of bacterial cell walls. The phage-associated endolysins also possess the ability to bring about degradation of the peptidoglycans that are associated with Gram-positive bacterial cells and results in the development of cytoplasmic membrane vesicles (Coelho and Casadevall 2019) (Fig. 3).

Fig. 3
figure 3

Schematic representation of biogenesis of exosome, its role in biofilm formation and evasion of host immune response

The antigenic determinants of bacteria are processed by macrophages, dendritic cells and the antigen is presented, the CD4 and CD8 ligands are associated and the complex is called antigen-presenting cell (APC). In response to APC, the cytokinins, interleukins are secreted and the inflammatory reaction is established. To counteract the immunological response conferred by the host, bacteria expel the exosomes in the form of intraluminal vesicles (Hurley 2010), which diffuse into the plasma membrane of host cell (Shorey et al. 2015). The candidate bacteria express its downstream genes for the exosome activation and endocytosis into host plasma membrane (Woodman and Futter 2008).

These membrane vesicles (MVs) partake in the transfer of various intercellular factors that result in the development of resistance against various types of disinfectants and antibiotics (Rodrigues et al. 2008). It was also reported that MVs carry various types of virulence factors and endotoxins that are produced by Gram-positive and Gram-negative bacterial species (Coelho and Casadevall 2019), as well.

Evasion of immune reaction by (Outer Membrane Vesicles) OMVs

As mentioned earlier, outer-membrane vesicles (OMVs) are spherical buds of the outer membrane filled with periplasmic content (Fig. 4) and are commonly produced by Gram-negative bacteria (Schwechheimer and Kuehn 2015).

Fig. 4
figure 4

The blebbing of OMV from atypical Gram-negative bacteria (arrow indicates the point of blebbing)

The OMVs result in the development of pathogenesis within the eukaryotic cells by the delivery of various types of virulence factors and toxins and also bring about change in the homeostasis of the immune system (Celluzzi and Masotti 2016). It has been observed that OMVs produced by Bacteroides thetaiotaomicron within the mucosal walls of gut are responsible for the inflammation of the intestine (Pathirana and Kaparakis-Liaskos 2016). Besides they can bring about caveolin-mediated endocytosis, non-clathrin-mediated endocytosis, clathrin-mediated endocytosis and macro-pinocytosis (O’Donoghue and Krachler 2016). OMVs show resistance to various types of degradative enabling them for easy evasion to the host immune system (Bonnington and Kuehn 2014). It has been observed that OMVs produced by Moraxella catarrhalis to guide the cell in evading the host immune system (Perez Vidakovics et al. 2010). This also helps in colonization of bacterial cells by killing or promoting the growth of other bacterial cells (Hickey et al. 2015).

The exposure of the bacterial cells to environmental stresses like antibiotics and environmental contaminants results in the evolution of OMVs and generation of efflux of multidrug pumps thereby preventing the penetration of the antibiotics up to the sessile microcolonies (Manning and Kuehn 2011). The OMVs also possess the ability to enhance the expression of the surface-associated receptors and activate ABC transporter thereby enhances the survival of bacteria. The enhancement of stress response of the bacterial cells takes place by the production of various types of unfolded and misfolded proteins to OMVs (Baumgarten et al. 2012). They are also responsible for the deliverance of the components associated with extracellular matrix and growth factors (Klimentová and Stulík 2015). The exopolysaccharides that are released by OMVs enhance the aggregation of the cells within the biofilm thereby shifts from the planktonic to sessile forms causing enhanced biofilm formation (Klimentová and Stulík 2015). The OMVs also possess the ability to protect the bacterial cells from the action of antimicrobial peptides and act as a carriage for determinants of resistance.

Role of extracellular vesicles (EVs) on polymicrobial biofilm

Exosomes are the biologically produced EVs that are produced by various types of the cells. The EVs are responsible for the maintenance of intercellular signaling by transference of RNA, DNA, and various types of proteins. Typically, Gram-positive bacteria readily produce extracellular vesicles (EVs). Lee et al. (2013) had mentioned that Staphylococcus aureus would unshackle BlaZ, a β-lactamase protein, using EVs as carrier. Hansol Im et al. (2017) had inferred that S. aureus had utilized EVs for restricting the biofilm growth by other bacteria, namely Acinetobacter baumannii, thus annotating a function to EVs as ‘surface binding antagonistics.’ However, it was observed that there is a coordination of different bacterial species to form a biofilm on a particular surface, which is called as a ‘Polymicrobial biofilm’ (Willems et al. 2016). The dental caries, GI tract, etc., are co-infected by either different species of bacteria/bacteria-virus/bacteria-fungal/viral-fungal strains. In this case, nutrition circularization is made by EVs. It is now reported that EVs secreted during viral infection promote secondary bacterial growth and biofilm formation (as in Pseudomonas aeruginosa after the viral infection) by vesicular delivery of nutrient and other factors and thereby proved to offer evidence of trans-kingdom communication in the setting of polymicrobial biofilm in host body (Hendricks et al. 2021).

Conclusion and future prospects

It is clear that exosomes play a crucial role in the biogenesis of multispecies even trans-kingdom biofilm matrix which encourages the establishment of co-infection and pathogenic intervention by opportunistic pathogens. As the emergence of multi-drug resistance in clinical setup is acute evidence, exosomes should be considered as alternative drug targets. Efforts should be made, in targeting the EVs produced and selective destruction or blockage of their release may open an avenue for reducing the dreadful pathogenic effect of biofilm borne microbes toward their host.

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All data generated or analyzed during this study are included in this published article.

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DL, MN, AD, and TS. contributed to conceptualization; SP, SG, HAE, SP, ZAK, and RR contributed to methodology; DL, MN, AD, and TS contributed to data collection; DL, MN, AD and TS, SP, SG, HAE, SP, ZAK, and RR contributed to writing—original draft preparation; DL, MN, AD and TS, SP, SG, HAE, SP, ZAK, and RR contributed to writing—review and editing. All authors have read and agreed to the published version of the manuscript.

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Correspondence to Zulhisyam Abdul Kari or Rina Rani Ray.

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Lahiri, D., Nag, M., Dey, A. et al. Exosome-associated host–pathogen interaction: a potential effect of biofilm formation. J Anal Sci Technol 12, 54 (2021). https://doi.org/10.1186/s40543-021-00306-1

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Keywords

  • Exosomes
  • Membrane vesicles
  • Immunogenic response
  • Biofilm
  • Resistance
  • Bioprospecting