Table 1 Description of datasets including number of singlets, doublets and cells filtering criteria
From: Nonlinear dimensionality reduction based visualization of single-cell RNA sequencing data
scRNA-seq dataset | No. of cells | No. of genes | No. of cell type | No. of singlet | No. of doublet | Filtering criterion |
|---|---|---|---|---|---|---|
Human pancreas | 16,382 | 19,093 | 14 | 16,373 | 9 | \(\mathrm{C{\prime}} = \{\mathrm{c in C }:\mathrm{ n}({\text{c}}) \ge 200\}\) \({Z}{\prime}= Z\left[:, \left(M \ge 10\right)\right]\) |
Human skeletal muscle | 52,825 | 33,538 | 8 | 52,743 | 82 | \(\mathrm{C{\prime}} = \{\mathrm{c in C }:\mathrm{ n}({\text{c}}) \ge 100\}\) \({Z}{\prime}= Z\left[:, \left(M \ge 10\right)\right]\) |
Human heart | 38,929 | 27,420 | 13 | 37,450 | 1479 | \(\mathrm{C{\prime}} = \{\mathrm{c in C }:\mathrm{ n}({\text{c}}) \ge 200\}\) \({Z}{\prime}= Z\left[:, \left(M \ge 10\right)\right]\) |